Publications

Dopkins N, Singh B, Michael S, Zhang P, Marston JL, Fei T, Singh M, Feschotte C, Collins N, Bendall ML et al..  2024.  Ribosomal profiling of human endogenous retroviruses in healthy tissues.. BMC Genomics. 25(1):5.

Hill AA, Kim M, Zegarra-Ruiz DF, Chang L-C, Norwood K, Assié A, Wu W-JH, Renfroe MC, Song HWong, Major AM et al..  2023.  Acute high-fat diet impairs macrophage-supported intestinal damage resolution.. JCI Insight. 8(3)

Liebhoff A-M, Venkataraman T, Morgenlander WR, Na M, Kula T, Waugh K, Morrison C, Rewers M, Longman R, Round J et al..  2023.  Efficient encoding of large antigenic spaces by epitope prioritization with Dolphyn.. bioRxiv.

Ma Y, Sannino D, Linden JR, Haigh S, Zhao B, Grigg JB, Zumbo P, Dündar F, Butler D, Profaci CP et al..  2023.  Epsilon toxin-producing Clostridium perfringens colonize the multiple sclerosis gut microbiome overcoming CNS immune privilege.. J Clin Invest. 133(9)

Rajan A, Pan Y, Mahtani P, Niec R, Longman R, Gerber J, Lukin D, Scherl E, Battat R.  2023.  The Impact of Confounders on Symptom-Endoscopic Discordances in Crohn's Disease.. Crohns Colitis 360. 5(2):otad017.

Gainullina A, Mogilenko DA, Huang L-H, Todorov H, Narang V, Kim K-W, Yng LSheau, Kent A, Jia B, Seddu K et al..  2023.  Network analysis of large-scale ImmGen and Tabula Muris datasets highlights metabolic diversity of tissue mononuclear phagocytes.. Cell Rep. 42(2):112046.

Viladomiu M, Khounlotham M, Dogan B, Lima SF, Elsaadi A, Cardakli E, Castellanos JG, Ng C, Herzog J, Schoenborn AA et al..  2022.  Agr2-associated ER stress promotes adherent-invasive E. coli dysbiosis and triggers CD103+ dendritic cell IL-23-dependent ileocolitis.. Cell Rep. 41(7):111637.

Göktuna SI, Canli O, Bollrath J, Fingerle AA, Horst D, Diamanti MA, Pallangyo C, Bennecke M, Nebelsiek T, Mankan AK et al..  2022.  IKKα Promotes Intestinal Tumorigenesis by Limiting Recruitment of M1-like Polarized Myeloid Cells.. Cell Rep. 38(9):110471.

Li XV, Leonardi I, Putzel GG, Semon A, Fiers WD, Kusakabe T, Lin W-Y, Gao IH, Doron I, Gutierrez-Guerrero A et al..  2022.  Immune regulation by fungal strain diversity in inflammatory bowel disease.. Nature. 603(7902):672-678.

Ruiz DFZegarra, Kim DV, Norwood K, Saldana-Morales FB, Kim M, Ng C, Callaghan R, Uddin M, Chang L-C, Longman RS et al..  2022.  Microbiota manipulation to increase macrophage IL-10 improves colitis and limits colitis-associated colorectal cancer.. Gut Microbes. 14(1):2119054.

Ruiz DFZegarra, Kim DV, Norwood K, Saldana-Morales FB, Kim M, Ng C, Callaghan R, Uddin M, Chang L-C, Longman RS et al..  2022.  Microbiota manipulation to increase macrophage IL-10 improves colitis and limits colitis-associated colorectal cancer.. Gut Microbes. 14(1):2119054.

Barbet G, Nair-Gupta P, Schotsaert M, Yeung ST, Moretti J, Seyffer F, Metreveli G, Gardner T, Choi A, Tortorella D et al..  2021.  TAP dysfunction in dendritic cells enables noncanonical cross-presentation for T cell priming.. Nat Immunol. 22(4):497-509.

Chikina AS, Nadalin F, Maurin M, San-Roman M, Thomas-Bonafos T, Li XV, Lameiras S, Baulande S, Henri S, Malissen B et al..  2020.  Macrophages Maintain Epithelium Integrity by Limiting Fungal Product Absorption.. Cell.

Vasanthakumar A, Chisanga D, Blume J, Gloury R, Britt K, Henstridge DC, Zhan Y, Torres SValle, Liene S, Collins N et al..  2020.  Sex-specific adipose tissue imprinting of regulatory T cells.. Nature. 579(7800):581-585.

Guo C-J, Allen BM, Hiam KJ, Dodd D, Van Treuren W, Higginbottom S, Nagashima K, Fischer CR, Sonnenburg JL, Spitzer MH et al..  2019.  Depletion of microbiome-derived molecules in the host using genetics.. Science. 366(6471)

Ladinsky MS, Araujo LP, Zhang X, Veltri J, Galan-Diez M, Soualhi S, Lee C, Irie K, Pinker EY, Narushima S et al..  2019.  Endocytosis of commensal antigens by intestinal epithelial cells regulates mucosal T cell homeostasis.. Science. 363(6431)

Ladinsky MS, Araujo LP, Zhang X, Veltri J, Galan-Diez M, Soualhi S, Lee C, Irie K, Pinker EY, Narushima S et al..  2019.  Endocytosis of commensal antigens by intestinal epithelial cells regulates mucosal T cell homeostasis.. Science. 363(6431)

Pertesi M, Vallée M, Wei X, Revuelta MV, Galia P, Demangel D, Oliver J, Foll M, Chen S, Perrial E et al..  2019.  Exome sequencing identifies germline variants in DIS3 in familial multiple myeloma.. Leukemia. 33(9):2324-2330.

Pertesi M, Vallée M, Wei X, Revuelta MV, Galia P, Demangel D, Oliver J, Foll M, Chen S, Perrial E et al..  2019.  Exome sequencing identifies germline variants in DIS3 in familial multiple myeloma.. Leukemia. 33(9):2324-2330.

Pertesi M, Vallée M, Wei X, Revuelta MV, Galia P, Demangel D, Oliver J, Foll M, Chen S, Perrial E et al..  2019.  Exome sequencing identifies germline variants in DIS3 in familial multiple myeloma.. Leukemia. 33(9):2324-2330.

Limon JJ, Tang J, Li D, Wolf AJ, Michelsen KS, Funari V, Gargus M, Nguyen C, Sharma P, Maymi VI et al..  2019.  Malassezia Is Associated with Crohn's Disease and Exacerbates Colitis in Mouse Models.. Cell Host Microbe. 25(3):377-388.e6.

Nagashima H, Mahlakõiv T, Shih H-Y, Davis FP, Meylan F, Huang Y, Harrison OJ, Yao C, Mikami Y, Urban JF et al..  2019.  Neuropeptide CGRP Limits Group 2 Innate Lymphoid Cell Responses and Constrains Type 2 Inflammation.. Immunity.

Pascutti MFernanda, Geerman S, Collins N, Brasser G, Nota B, Stark R, Behr F, Oja A, Slot E, Panagioti E et al..  2019.  Peripheral and systemic antigens elicit an expandable pool of resident memory CD8+ T cells in the bone marrow.. Eur J Immunol. 49(6):853-872.

Pascutti MFernanda, Geerman S, Collins N, Brasser G, Nota B, Stark R, Behr F, Oja A, Slot E, Panagioti E et al..  2019.  Peripheral and systemic antigens elicit an expandable pool of resident memory CD8+ T cells in the bone marrow.. Eur J Immunol. 49(6):853-872.

Uzzan M, Tokuyama M, Rosenstein AK, Tomescu C, SahBandar IN, Ko HM, Leyre L, Chokola A, Kaplan-Lewis E, Rodriguez G et al..  2018.  Anti-α4β7 therapy targets lymphoid aggregates in the gastrointestinal tract of HIV-1-infected individuals.. Sci Transl Med. 10(461)