Publications

Awasthi D, Chopra S, Cho BA, Emmanuelli A, Sandoval TA, Hwang S-M, Chae C-S, Salvagno C, Tan C, Vasquez-Urbina L et al..  2023.  Inflammatory ER stress responses dictate the immunopathogenic progression of systemic candidiasis.. J Clin Invest. 133(17)

Sei S, Ahadova A, Keskin DB, Bohaumilitzky L, Gebert J, Doeberitz Mvon Knebel, Lipkin SM, Kloor M.  2023.  Lynch syndrome cancer vaccines: A roadmap for the development of precision immunoprevention strategies.. Front Oncol. 13:1147590.

Han S-J, Stacy A, Corral D, Link VM, De Siqueira MKrystel, Chi L, Teijeiro A, Yong DS, P Perez-Chaparro J, Bouladoux N et al..  2023.  Microbiota configuration determines nutritional immune optimization.. Proc Natl Acad Sci U S A. 120(49):e2304905120.

Gainullina A, Mogilenko DA, Huang L-H, Todorov H, Narang V, Kim K-W, Yng LSheau, Kent A, Jia B, Seddu K et al..  2023.  Network analysis of large-scale ImmGen and Tabula Muris datasets highlights metabolic diversity of tissue mononuclear phagocytes.. Cell Rep. 42(2):112046.

Kim B, Rothenberg ME, Sun X, Bachert C, Artis D, Zaheer R, Deniz Y, Rowe P, Cyr S.  2023.  Neuroimmune interplay during type 2 inflammation: Symptoms, mechanisms, and therapeutic targets in atopic diseases.. J Allergy Clin Immunol.

Offit K, Sharkey CM, Green D, Wu X, Trottier M, Hamilton JG, Walsh MF, Dandiker S, Belhadj S, Lipkin SM et al..  2023.  Regulation of Laboratory-Developed Tests in Preventive Oncology: Emerging Needs and Opportunities.. J Clin Oncol. 41(1):11-21.

Smith ES, Chen J, Pan Y, Mahtani P, Lukin D, Ahmed W, Longman R, Burakoff R, Scherl E, Battat R.  2023.  The Relationship Between the Endoscopic Healing Index, Fecal Calprotectin, and Magnetic Resonance Enterography in Crohn's Disease.. J Clin Gastroenterol.

Tamari M, Del Bel KL, Heul AMVer, Zamidar L, Orimo K, Hoshi M, Trier AM, Yano H, Yang T-L, Biggs CM et al..  2023.  Sensory neurons promote immune homeostasis in the lung.. Cell.

Mon KJoy Yee, J Blander M.  2023.  TAP-ing into the cross-presentation secrets of dendritic cells.. Curr Opin Immunol. 83:102327.

Venturelli OS, Wang HH, Estrela S, Huang KCasey, Ledesma-Amaro R, Fedorec AJH, Stecher B, Lawson CE, Zarrinpar A, Guo C-J et al..  2023.  What is the key challenge in engineering microbiomes? Cell Syst. 14(2):85-90.

Iliev ID, Lin W-Y, Gaffen SL.  2023.  When IL-17 gets on your nerves.. Cell. 186(3):466-468.

Viladomiu M, Khounlotham M, Dogan B, Lima SF, Elsaadi A, Cardakli E, Castellanos JG, Ng C, Herzog J, Schoenborn AA et al..  2022.  Agr2-associated ER stress promotes adherent-invasive E. coli dysbiosis and triggers CD103+ dendritic cell IL-23-dependent ileocolitis.. Cell Rep. 41(7):111637.

Moretti J, Jia B, Hutchins Z, Roy S, Yip H, Wu J, Shan M, Jaffrey SR, Coers J, J Blander M.  2022.  Caspase-11 interaction with NLRP3 potentiates the noncanonical activation of the NLRP3 inflammasome.. Nat Immunol. 23(5):705-717.

Irie M, Sasahara K, Artis D, Kabata H.  2022.  Current overview of the role of neuropeptides in ILC2s and future directions.. Allergol Int. 71(3):294-300.

Lima SF, Longman RS.  2022.  Eating for Two: Diet and the Microbiome in Ulcerative Colitis.. J Crohns Colitis. 16(3):341-342.

Case NT, Berman J, Blehert DS, Cramer RA, Cuomo C, Currie CR, Ene IV, Fisher MC, Fritz-Laylin LK, Gerstein AC et al..  2022.  The future of fungi: threats and opportunities.. G3 (Bethesda).

Case NT, Berman J, Blehert DS, Cramer RA, Cuomo C, Currie CR, Ene IV, Fisher MC, Fritz-Laylin LK, Gerstein AC et al..  2022.  The future of fungi: threats and opportunities.. G3 (Bethesda).

Jin W-B, Li T-T, Huo D, Qu S, Li XV, Arifuzzaman M, Lima SF, Shi H-Q, Wang A, Putzel GG et al..  2022.  Genetic manipulation of gut microbes enables single-gene interrogation in a complex microbiome.. Cell. 185(3):547-562.e22.

Zhou L, Zhou W, Joseph AM, Chu C, Putzel GG, Fang B, Teng F, Lyu M, Yano H, Andreasson KI et al..  2022.  Group 3 innate lymphoid cells produce the growth factor HB-EGF to protect the intestine from TNF-mediated inflammation.. Nat Immunol.

Zhang W, Lyu M, Bessman NJ, Xie Z, Arifuzzaman M, Yano H, Parkhurst CN, Chu C, Zhou L, Putzel GG et al..  2022.  Gut-innervating nociceptors regulate the intestinal microbiota to promote tissue protection.. Cell.

Göktuna SI, Canli O, Bollrath J, Fingerle AA, Horst D, Diamanti MA, Pallangyo C, Bennecke M, Nebelsiek T, Mankan AK et al..  2022.  IKKα Promotes Intestinal Tumorigenesis by Limiting Recruitment of M1-like Polarized Myeloid Cells.. Cell Rep. 38(9):110471.

Lyu M, Suzuki H, Kang L, Gaspal F, Zhou W, Goc J, Zhou L, Zhou J, Zhang W, Shen Z et al..  2022.  ILC3s select microbiota-specific regulatory T cells to establish tolerance in the gut.. Nature.

Li XV, Leonardi I, Putzel GG, Semon A, Fiers WD, Kusakabe T, Lin W-Y, Gao IH, Doron I, Gutierrez-Guerrero A et al..  2022.  Immune regulation by fungal strain diversity in inflammatory bowel disease.. Nature. 603(7902):672-678.

Porras AMaria, Zhou H, Shi Q, Xiao X, Longman R, Brito ILauren.  2022.  Inflammatory Bowel Disease-Associated Gut Commensals Degrade Components of the Extracellular Matrix.. mBio. 13(6):e0220122.

Arifuzzaman M, Won THyung, Li T-T, Yano H, Digumarthi S, Heras AF, Zhang W, Parkhurst CN, Kashyap S, Jin W-B et al..  2022.  Inulin fibre promotes microbiota-derived bile acids and type 2 inflammation.. Nature. 611(7936):578-584.