Publications

Zhou W, Zhou JZ, Ahmed A, Kim MJoon, Guo C-J, Sonnenberg GF.  2025.  ILC3s sense gut microbiota through STING to initiate immune tolerance.. Immunity. 58(7):1762-1777.e7.

Cong J, Liu P, Han Z, Ying W, Li C, Yang Y, Wang S, Yang J, Cao F, Shen J et al..  2024.  Bile acids modified by the intestinal microbiota promote colorectal cancer growth by suppressing CD8+ T cell effector functions.. Immunity. 57(4):876-889.e11.

Ahmed A, Joseph AM, Zhou J, Horn V, Uddin J, Lyu M, Goc J, Sockolow RE, Wing JB, Vivier E et al..  2024.  CTLA-4-expressing ILC3s restrain interleukin-23-mediated inflammation.. Nature. 630(8018):976-983.

Arifuzzaman M, Won THyung, Yano H, Uddin J, Emanuel ER, Hu E, Zhang W, Li T-T, Jin W-B, Grier A et al..  2024.  Dietary fiber is a critical determinant of pathologic ILC2 responses and intestinal inflammation.. J Exp Med. 221(5)

Emanuel E, Arifuzzaman M, Artis D.  2024.  Epithelial-neuronal-immune cell interactions: Implications for immunity, inflammation, and tissue homeostasis at mucosal sites.. J Allergy Clin Immunol. 153(5):1169-1180.

Galloway-Peña J, Iliev ID, McAllister F.  2024.  Fungi in cancer.. Nat Rev Cancer. 24(5):295-298.

Horn V, Sonnenberg GF.  2024.  Group 3 innate lymphoid cells in intestinal health and disease.. Nat Rev Gastroenterol Hepatol.

Sanidad KZ, Rager SL, Carrow HC, Ananthanarayanan A, Callaghan R, Hart LR, Li T, Ravisankar P, Brown JA, Amir M et al..  2024.  Gut bacteria-derived serotonin promotes immune tolerance in early life.. Sci Immunol. 9(93):eadj4775.

Li T-T, Chen X, Huo D, Arifuzzaman M, Qiao S, Jin W-B, Shi H, Li XV, Iliev ID, Artis D et al..  2024.  Microbiota metabolism of intestinal amino acids impacts host nutrient homeostasis and physiology.. Cell Host Microbe.

Arifuzzaman M, Collins N, Guo C-J, Artis D.  2024.  Nutritional regulation of microbiota-derived metabolites: Implications for immunity and inflammation.. Immunity. 57(1):14-27.

Dopkins N, Singh B, Michael S, Zhang P, Marston JL, Fei T, Singh M, Feschotte C, Collins N, Bendall ML et al..  2024.  Ribosomal profiling of human endogenous retroviruses in healthy tissues.. BMC Genomics. 25(1):5.

Joseph AM, Ahmed A, Goc J, Horn V, Fiedler B, Garone D, Grigg JB, Uddin J, Teng F, Fritsch M et al..  2024.  RIPK3 and caspase-8 interpret cytokine signals to regulate ILC3 survival in the gut.. Mucosal Immunol.

Chi L, Liu C, Gribonika I, Gschwend J, Corral D, Han S-J, Lim AIng, Rivera CA, Link VM, Wells AC et al..  2024.  Sexual dimorphism in skin immunity is mediated by an androgen-ILC2-dendritic cell axis.. Science. 384(6692):eadk6200.

Hill AA, Kim M, Zegarra-Ruiz DF, Chang L-C, Norwood K, Assié A, Wu W-JH, Renfroe MC, Song HWong, Major AM et al..  2023.  Acute high-fat diet impairs macrophage-supported intestinal damage resolution.. JCI Insight. 8(3)

J Blander M.  2023.  Different routes of MHC-I delivery to phagosomes and their consequences to CD8 T cell immunity.. Semin Immunol. 66:101713.

Park SL, Christo SN, Wells AC, Gandolfo LC, Zaid A, Alexandre YO, Burn TN, Schröder J, Collins N, Han S-J et al..  2023.  Divergent molecular networks program functionally distinct CD8+ skin-resident memory T cells.. Science. 382(6674):1073-1079.

Wheeler MA, Clark IC, Lee H-G, Li Z, Linnerbauer M, Rone JM, Blain M, Akl CFaust, Piester G, Giovannoni F et al..  2023.  Droplet-based forward genetic screening of astrocyte-microglia cross-talk.. Science. 379(6636):1023-1030.

Liebhoff A-M, Venkataraman T, Morgenlander WR, Na M, Kula T, Waugh K, Morrison C, Rewers M, Longman R, Round J et al..  2023.  Efficient encoding of large antigenic spaces by epitope prioritization with Dolphyn.. bioRxiv.

Abramson J, Dobeš J, Lyu M, Sonnenberg GF.  2023.  The emerging family of RORγt+ antigen-presenting cells.. Nat Rev Immunol.

Ma Y, Sannino D, Linden JR, Haigh S, Zhao B, Grigg JB, Zumbo P, Dündar F, Butler D, Profaci CP et al..  2023.  Epsilon toxin-producing Clostridium perfringens colonize the multiple sclerosis gut microbiome overcoming CNS immune privilege.. J Clin Invest. 133(9)

Sargsian S, Lejeune A, Ercelen D, Jin W-B, Varghese A, Loke P'ng, Lim YAL, Guo C-J, Cadwell K.  2023.  Functional characterization of helminth-associated Clostridiales reveals covariates of Treg differentiation.. bioRxiv.

Lin W-Y, Iliev ID.  2023.  Gut epithelium modulates fungal pathogenesis.. Science. 381(6657):483-484.

Topczewska PM, Rompe ZA, Jakob MO, Stamm A, Leclère PS, Preußer A, Duerr CU, Thole LMarie Laur, Kotsch K, Artis D et al..  2023.  ILC2 require cell-intrinsic ST2 signals to promote type 2 immune responses.. Front Immunol. 14:1130933.

Doron I, Kusakabe T, Iliev ID.  2023.  Immunoglobulins at the interface of the gut mycobiota and anti-fungal immunity.. Semin Immunol. 67:101757.

Rajan A, Pan Y, Mahtani P, Niec R, Longman R, Gerber J, Lukin D, Scherl E, Battat R.  2023.  The Impact of Confounders on Symptom-Endoscopic Discordances in Crohn's Disease.. Crohns Colitis 360. 5(2):otad017.