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A
Viladomiu M
,
Metz ML
,
Lima SF
,
Jin W-B
,
Chou L
,
Guo C-J
,
Diehl GE
,
Simpson KW
,
Scherl EJ
,
Longman RS
.
Adherent-invasive E. coli metabolism of propanediol in Crohn's disease regulates phagocytes to drive intestinal inflammation.
Cell Host Microbe. 2021;.
Viladomiu M
,
Khounlotham M
,
Dogan B
,
Lima SF
,
Elsaadi A
,
Cardakli E
,
Castellanos JG
,
Ng C
,
Herzog J
,
Schoenborn AA
,
Ellermann M
,
Liu B
,
Zhang S
,
Gulati AS
,
R Sartor B
,
Simpson KW
,
Lipkin SM
,
Longman RS
.
Agr2-associated ER stress promotes adherent-invasive E. coli dysbiosis and triggers CD103+ dendritic cell IL-23-dependent ileocolitis.
Cell Rep. 2022;41(7):111637.
Blander JM
,
Visintin I
,
Janeway CA
,
Medzhitov R
.
Alpha(1,3)-fucosyltransferase VII and alpha(2,3)-sialyltransferase IV are up-regulated in activated CD4 T cells and maintained after their differentiation into Th1 and migration into inflammatory sites.
J Immunol. 1999;163(7):3746-52.
Grigg JB
,
Shanmugavadivu A
,
Regen T
,
Parkhurst CN
,
Ahmed A
,
Joseph AM
,
Mazzucco M
,
Gronke K
,
Diefenbach A
,
Eberl G
,
Vartanian T
,
Waisman A
,
Sonnenberg GF
.
Antigen-presenting innate lymphoid cells orchestrate neuroinflammation.
Nature. 2021;.
Glynn S
,
Lipkin S
,
Zhang T
,
Sboner A
,
Elemento O
,
Van Besien K
,
Beltran H
.
The application of precision medicine in diagnosing familial Mediterranean fever.
Leuk Lymphoma. 2019;60(8):2091-2093.
C
Offit K
,
Tkachuk KA
,
Stadler ZK
,
Walsh MF
,
Diaz-Zabala H
,
Levin JD
,
Steinsnyder Z
,
Ravichandran V
,
Sharaf RN
,
Frey MK
,
Lipkin SM
,
Robson ME
,
Hamilton JG
,
Vijai J
,
Mukherjee S
.
Cascading After Peridiagnostic Cancer Genetic Testing: An Alternative to Population-Based Screening.
J Clin Oncol. 2020;:JCO1902010.
Backer RA
,
Helbig C
,
Gentek R
,
Kent A
,
Laidlaw BJ
,
Dominguez CX
,
de Souza YS
,
van Trierum SE
,
van Beek R
,
Rimmelzwaan GF
,
Brinke Aten
,
A Willemsen M
,
van Kampen AHC
,
Kaech SM
,
J Blander M
,
van Gisbergen K
,
Amsen D
.
A central role for Notch in effector CD8(+) T cell differentiation.
Nat Immunol. 2014;15(12):1143-51.
Backer RA
,
Helbig C
,
Gentek R
,
Kent A
,
Laidlaw BJ
,
Dominguez CX
,
de Souza YS
,
van Trierum SE
,
van Beek R
,
Rimmelzwaan GF
,
Brinke Aten
,
A Willemsen M
,
van Kampen AHC
,
Kaech SM
,
J Blander M
,
van Gisbergen K
,
Amsen D
.
A central role for Notch in effector CD8(+) T cell differentiation.
Nat Immunol. 2014;15(12):1143-51.
Backer RA
,
Helbig C
,
Gentek R
,
Kent A
,
Laidlaw BJ
,
Dominguez CX
,
de Souza YS
,
van Trierum SE
,
van Beek R
,
Rimmelzwaan GF
,
Brinke Aten
,
A Willemsen M
,
van Kampen AHC
,
Kaech SM
,
J Blander M
,
van Gisbergen K
,
Amsen D
.
A central role for Notch in effector CD8(+) T cell differentiation.
Nat Immunol. 2014;15(12):1143-51.
Backer RA
,
Helbig C
,
Gentek R
,
Kent A
,
Laidlaw BJ
,
Dominguez CX
,
de Souza YS
,
van Trierum SE
,
van Beek R
,
Rimmelzwaan GF
,
Brinke Aten
,
A Willemsen M
,
van Kampen AHC
,
Kaech SM
,
J Blander M
,
van Gisbergen K
,
Amsen D
.
A central role for Notch in effector CD8(+) T cell differentiation.
Nat Immunol. 2014;15(12):1143-51.
Osborne LC
,
Monticelli LA
,
Nice TJ
,
Sutherland TE
,
Siracusa MC
,
Hepworth MR
,
Tomov VT
,
Kobuley D
,
Tran SV
,
Bittinger K
,
Bailey AG
,
Laughlin AL
,
Boucher J-L
,
E Wherry J
,
Bushman FD
,
Allen JE
,
Virgin HW
,
Artis D
.
Coinfection. Virus-helminth coinfection reveals a microbiota-independent mechanism of immunomodulation.
Science. 2014;345(6196):578-82.
Crespo M
,
Vilar E
,
Tsai S-Y
,
Chang K
,
Amin S
,
Srinivasan T
,
Zhang T
,
Pipalia NH
,
Chen HJoyce
,
Witherspoon M
,
Gordillo M
,
Xiang JZhaoying
,
Maxfield FR
,
Lipkin S
,
Evans T
,
Chen S
.
Colonic organoids derived from human induced pluripotent stem cells for modeling colorectal cancer and drug testing.
Nat Med. 2017;23(7):878-884.
Harrison OJ
,
Linehan JL
,
Shih H-Y
,
Bouladoux N
,
Han S-J
,
Smelkinson M
,
Sen SK
,
Byrd AL
,
Enamorado M
,
Yao C
,
Tamoutounour S
,
Van Laethem F
,
Hurabielle C
,
Collins N
,
Paun A
,
Salcedo R
,
O'Shea JJ
,
Belkaid Y
.
Commensal-specific T cell plasticity promotes rapid tissue adaptation to injury.
Science. 2019;363(6422).
Nice TJ
,
Osborne LC
,
Tomov VT
,
Artis D
,
E Wherry J
,
Virgin HW
.
Correction: Type I Interferon Receptor Deficiency in Dendritic Cells Facilitates Systemic Murine Norovirus Persistence Despite Enhanced Adaptive Immunity.
PLoS Pathog. 2017;13(2):e1006223.
Crespo M
,
Vilar E
,
Tsai S-Y
,
Chang K
,
Amin S
,
Srinivasan T
,
Zhang T
,
Pipalia NH
,
Chen HJoyce
,
Witherspoon M
,
Gordillo M
,
Xiang JZhaoying
,
Maxfield FR
,
Lipkin S
,
Evans T
,
Chen S
.
Corrigendum: Colonic organoids derived from human induced pluripotent stem cells for modeling colorectal cancer and drug testing.
Nat Med. 2018;24(4):526.
Longman RS
,
Diehl GE
,
Victorio DA
,
Huh JR
,
Galan C
,
Miraldi ER
,
Swaminath A
,
Bonneau R
,
Scherl EJ
,
Littman DR
.
CX₃CR1⁺ mononuclear phagocytes support colitis-associated innate lymphoid cell production of IL-22.
J Exp Med. 2014;211(8):1571-83.
D
Viladomiu M
,
Longman RS
.
Decoding the matrix: multiomics reveals host-microbe biomarker for inflammatory bowel disease.
J Clin Invest. 2021;131(9).
Bessman NJ
,
Mathieu JRR
,
Renassia C
,
Zhou L
,
Fung TC
,
Fernandez KC
,
Austin C
,
Moeller JB
,
Zumerle S
,
Louis S
,
Vaulont S
,
Ajami NJ
,
Sokol H
,
Putzel GG
,
Arvedson T
,
Sockolow RE
,
Lakhal-Littleton S
,
Cloonan SM
,
Arora M
,
Peyssonnaux C
,
Sonnenberg GF
.
Dendritic cell-derived hepcidin sequesters iron from the microbiota to promote mucosal healing.
Science. 2020;368(6487):186-189.
Guo C-J
,
Allen BM
,
Hiam KJ
,
Dodd D
,
Van Treuren W
,
Higginbottom S
,
Nagashima K
,
Fischer CR
,
Sonnenburg JL
,
Spitzer MH
,
Fischbach MA
.
Depletion of microbiome-derived molecules in the host using genetics.
Science. 2019;366(6471).
Mackay LK
,
Rahimpour A
,
Ma JZ
,
Collins N
,
Stock AT
,
Hafon M-L
,
Vega-Ramos J
,
Lauzurica P
,
Mueller SN
,
Stefanovic T
,
Tscharke DC
,
Heath WR
,
Inouye M
,
Carbone FR
,
Gebhardt T
.
The developmental pathway for CD103(+)CD8+ tissue-resident memory T cells of skin.
Nat Immunol. 2013;14(12):1294-301.
E
Liebhoff A-M
,
Venkataraman T
,
Morgenlander WR
,
Na M
,
Kula T
,
Waugh K
,
Morrison C
,
Rewers M
,
Longman R
,
Round J
,
Elledge S
,
Ruczinski I
,
Langmead B
,
H Larman B
.
Efficient encoding of large antigenic spaces by epitope prioritization with Dolphyn.
bioRxiv. 2023;.
Ladinsky MS
,
Araujo LP
,
Zhang X
,
Veltri J
,
Galan-Diez M
,
Soualhi S
,
Lee C
,
Irie K
,
Pinker EY
,
Narushima S
,
Bandyopadhyay S
,
Nagayama M
,
Elhenawy W
,
Coombes BK
,
Ferraris RP
,
Honda K
,
Iliev ID
,
Gao N
,
Bjorkman PJ
,
Ivanov II
.
Endocytosis of commensal antigens by intestinal epithelial cells regulates mucosal T cell homeostasis.
Science. 2019;363(6431).
Ma Y
,
Sannino D
,
Linden JR
,
Haigh S
,
Zhao B
,
Grigg JB
,
Zumbo P
,
Dündar F
,
Butler D
,
Profaci CP
,
Telesford K
,
Winokur PN
,
Rumah KR
,
Gauthier SA
,
Fischetti VA
,
McClane BA
,
Uzal FA
,
Zexter L
,
Mazzucco M
,
Rudick R
,
Danko D
,
Balmuth E
,
Nealon N
,
Perumal J
,
Kaunzner U
,
Brito IL
,
Chen Z
,
Xiang JZ
,
Betel D
,
Daneman R
,
Sonnenberg GF
,
Mason CE
,
Vartanian T
.
Epsilon toxin-producing Clostridium perfringens colonize the multiple sclerosis gut microbiome overcoming CNS immune privilege.
J Clin Invest. 2023;133(9).
Pertesi M
,
Vallée M
,
Wei X
,
Revuelta MV
,
Galia P
,
Demangel D
,
Oliver J
,
Foll M
,
Chen S
,
Perrial E
,
Garderet L
,
Corre J
,
Leleu X
,
Boyle EM
,
Decaux O
,
Rodon P
,
Kolb B
,
Slama B
,
Mineur P
,
Voog E
,
Le Bris C
,
Fontan J
,
Maigre M
,
Beaumont M
,
Azais I
,
Sobol H
,
Vignon M
,
Royer B
,
Perrot A
,
Fuzibet J-G
,
Dorvaux V
,
Anglaret B
,
Cony-Makhoul P
,
Berthou C
,
Desquesnes F
,
Pegourie B
,
Leyvraz S
,
Mosser L
,
Frenkiel N
,
Augeul-Meunier K
,
Leduc I
,
Leyronnas C
,
Voillat L
,
Casassus P
,
Mathiot C
,
Cheron N
,
Paubelle E
,
Moreau P
,
Bignon Y-J
,
Joly B
,
Bourquard P
,
Caillot D
,
Naman H
,
Rigaudeau S
,
Marit G
,
Macro M
,
Lambrecht I
,
Cliquennois M
,
Vincent L
,
Helias P
,
Avet-Loiseau H
,
Moreno V
,
Reis RManuel
,
Varkonyi J
,
Kruszewski M
,
Vangsted AJuul
,
Jurczyszyn A
,
Zaucha JMaciej
,
Sainz J
,
Krawczyk-Kulis M
,
Wątek M
,
Pelosini M
,
Iskierka-Jażdżewska E
,
Grząśko N
,
Martinez-Lopez J
,
Jerez A
,
Campa D
,
Buda G
,
Lesueur F
,
Dudziński M
,
García-Sanz R
,
Nagler A
,
Rymko M
,
Jamroziak K
,
Butrym A
,
Canzian F
,
Obazee O
,
Nilsson B
,
Klein RJ
,
Lipkin SM
,
McKay JD
,
Dumontet C
.
Exome sequencing identifies germline variants in DIS3 in familial multiple myeloma.
Leukemia. 2019;33(9):2324-2330.
Pertesi M
,
Vallée M
,
Wei X
,
Revuelta MV
,
Galia P
,
Demangel D
,
Oliver J
,
Foll M
,
Chen S
,
Perrial E
,
Garderet L
,
Corre J
,
Leleu X
,
Boyle EM
,
Decaux O
,
Rodon P
,
Kolb B
,
Slama B
,
Mineur P
,
Voog E
,
Le Bris C
,
Fontan J
,
Maigre M
,
Beaumont M
,
Azais I
,
Sobol H
,
Vignon M
,
Royer B
,
Perrot A
,
Fuzibet J-G
,
Dorvaux V
,
Anglaret B
,
Cony-Makhoul P
,
Berthou C
,
Desquesnes F
,
Pegourie B
,
Leyvraz S
,
Mosser L
,
Frenkiel N
,
Augeul-Meunier K
,
Leduc I
,
Leyronnas C
,
Voillat L
,
Casassus P
,
Mathiot C
,
Cheron N
,
Paubelle E
,
Moreau P
,
Bignon Y-J
,
Joly B
,
Bourquard P
,
Caillot D
,
Naman H
,
Rigaudeau S
,
Marit G
,
Macro M
,
Lambrecht I
,
Cliquennois M
,
Vincent L
,
Helias P
,
Avet-Loiseau H
,
Moreno V
,
Reis RManuel
,
Varkonyi J
,
Kruszewski M
,
Vangsted AJuul
,
Jurczyszyn A
,
Zaucha JMaciej
,
Sainz J
,
Krawczyk-Kulis M
,
Wątek M
,
Pelosini M
,
Iskierka-Jażdżewska E
,
Grząśko N
,
Martinez-Lopez J
,
Jerez A
,
Campa D
,
Buda G
,
Lesueur F
,
Dudziński M
,
García-Sanz R
,
Nagler A
,
Rymko M
,
Jamroziak K
,
Butrym A
,
Canzian F
,
Obazee O
,
Nilsson B
,
Klein RJ
,
Lipkin SM
,
McKay JD
,
Dumontet C
.
Exome sequencing identifies germline variants in DIS3 in familial multiple myeloma.
Leukemia. 2019;33(9):2324-2330.
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