Publications

Park SL, Christo SN, Wells AC, Gandolfo LC, Zaid A, Alexandre YO, Burn TN, Schröder J, Collins N, Han S-J et al..  2023.  Divergent molecular networks program functionally distinct CD8+ skin-resident memory T cells.. Science. 382(6674):1073-1079.

Wheeler MA, Clark IC, Lee H-G, Li Z, Linnerbauer M, Rone JM, Blain M, Akl CFaust, Piester G, Giovannoni F et al..  2023.  Droplet-based forward genetic screening of astrocyte-microglia cross-talk.. Science. 379(6636):1023-1030.

Goc J, Lv M, Bessman NJ, Flamar A-L, Sahota S, Suzuki H, Teng F, Putzel GG, Eberl G, Withers DR et al..  2021.  Dysregulation of ILC3s unleashes progression and immunotherapy resistance in colon cancer.. Cell. 184(19):5015-5030.e16.

Lima SF, Longman RS.  2022.  Eating for Two: Diet and the Microbiome in Ulcerative Colitis.. J Crohns Colitis. 16(3):341-342.

Clemente JC, Iliev ID.  2020.  Editorial overview: Microbiota united-bacteria, fungi and host responses come into focus.. Curr Opin Microbiol. 56:vi-viii.

Iliev ID, Cadwell K.  2020.  Effects of Intestinal Fungi and Viruses on Immune Responses and Inflammatory Bowel Diseases.. Gastroenterology.

Liebhoff A-M, Venkataraman T, Morgenlander WR, Na M, Kula T, Waugh K, Morrison C, Rewers M, Longman R, Round J et al..  2023.  Efficient encoding of large antigenic spaces by epitope prioritization with Dolphyn.. bioRxiv.

Wojno EDTait, Artis D.  2016.  Emerging concepts and future challenges in innate lymphoid cell biology.. J Exp Med. 213(11):2229-2248.

Abramson J, Dobeš J, Lyu M, Sonnenberg GF.  2023.  The emerging family of RORγt+ antigen-presenting cells.. Nat Rev Immunol.

Zaiss DMW, Gause WC, Osborne LC, Artis D.  2015.  Emerging functions of amphiregulin in orchestrating immunity, inflammation, and tissue repair.. Immunity. 42(2):216-26.

Bessman NJ, Sonnenberg GF.  2016.  Emerging roles for antigen presentation in establishing host-microbiome symbiosis.. Immunol Rev. 272(1):139-50.

Ladinsky MS, Araujo LP, Zhang X, Veltri J, Galan-Diez M, Soualhi S, Lee C, Irie K, Pinker EY, Narushima S et al..  2019.  Endocytosis of commensal antigens by intestinal epithelial cells regulates mucosal T cell homeostasis.. Science. 363(6431)

Lima-Junior DS, Krishnamurthy SR, Disease CBiblio _ T, Collins N, Han S-J, Chen EY, Constantinides MG, Link VM, Lim AIng, Enamorado M et al..  2021.  Endogenous retroviruses promote homeostatic and inflammatory responses to the microbiota.. Cell. 184(14):3794-3811.e19.

Giacomin PR, Moy RH, Noti M, Osborne LC, Siracusa MC, Alenghat T, Liu B, McCorkell KA, Troy AE, Rak GD et al..  2015.  Epithelial-intrinsic IKKα expression regulates group 3 innate lymphoid cell responses and antibacterial immunity.. J Exp Med. 212(10):1513-28.

Emanuel E, Arifuzzaman M, Artis D.  2024.  Epithelial-neuronal-immune cell interactions: Implications for immunity, inflammation, and tissue homeostasis at mucosal sites.. J Allergy Clin Immunol. 153(5):1169-1180.

Ma Y, Sannino D, Linden JR, Haigh S, Zhao B, Grigg JB, Zumbo P, Dündar F, Butler D, Profaci CP et al..  2023.  Epsilon toxin-producing Clostridium perfringens colonize the multiple sclerosis gut microbiome overcoming CNS immune privilege.. J Clin Invest. 133(9)

Zhou L, Sonnenberg GF.  2018.  Essential immunologic orchestrators of intestinal homeostasis.. Sci Immunol. 3(20)

Witherspoon M, Sandu D, Lu C, Wang K, Edwards R, Yeung A, Gelincik O, Manfredi G, Gross S, Kopelovich L et al..  2019.  ETHE1 overexpression promotes SIRT1 and PGC1α mediated aerobic glycolysis, oxidative phosphorylation, mitochondrial biogenesis and colorectal cancer.. Oncotarget. 10(40):4004-4017.

Castellanos JG, Preminger J, Steinkamp ML, Longman RS, Pryor KO.  2020.  Evaluation of a novel ultraviolet-c irradiation locker for microbial sterilization of hospital laboratory coats.. J Hosp Infect.

Kelsen JR, Dawany N, Moran CJ, Petersen B-S, Sarmady M, Sasson A, Pauly-Hubbard H, Martinez A, Maurer K, Soong J et al..  2015.  Exome sequencing analysis reveals variants in primary immunodeficiency genes in patients with very early onset inflammatory bowel disease.. Gastroenterology. 149(6):1415-24.

Pertesi M, Vallée M, Wei X, Revuelta MV, Galia P, Demangel D, Oliver J, Foll M, Chen S, Perrial E et al..  2019.  Exome sequencing identifies germline variants in DIS3 in familial multiple myeloma.. Leukemia. 33(9):2324-2330.

Gogokhia L, Buhrke K, Bell R, Hoffman B, D Brown G, Hanke-Gogokhia C, Ajami NJ, Wong MC, Ghazaryan A, Valentine JF et al..  2019.  Expansion of Bacteriophages Is Linked to Aggravated Intestinal Inflammation and Colitis.. Cell Host Microbe. 25(2):285-299.e8.

J Blander M, Barbet G.  2018.  Exploiting vita-PAMPs in vaccines.. Curr Opin Pharmacol. 41:128-136.

Noti M, Kim BS, Siracusa MC, Rak GD, Kubo M, Moghaddam AE, Sattentau QA, Comeau MR, Spergel JM, Artis D.  2014.  Exposure to food allergens through inflamed skin promotes intestinal food allergy through the thymic stromal lymphopoietin-basophil axis.. J Allergy Clin Immunol. 133(5):1390-9,1399.e1-6.

Fiers WD, Leonardi I, Iliev ID.  2020.  From Birth and Throughout Life: Fungal Microbiota in Nutrition and Metabolic Health.. Annu Rev Nutr.